It appears you are referring to the balance of nature, which is impossible to achieve indoors. We can try to simulate it, but it's not the same. Just from a basic point of view, plants do better outside because of more light, air flow, pests are generally controlled, and it is their natural environment. All plants are native to the outdoors, somewhere.
We can take a croton, for example, and plant it in Florida and it'll grow into a bush. But we want them indoors, so we have to try to simulate the outdoors for them, in our house. So if you want to keep one indoors in Wisconsin, you have more work to do! The right water, the right light.....and if you do not, it stresses the plant. The plant will then show signs of the stress, be it cosmetic and all the way down to root rot.
If you notice when you enter a greenhouse, there is usually a fan running. That is to control pests and also the air movement keeps disease to a minimum. But it also helps the roots of the plants grow because the plant has to stabilize itself.
I also don't think plants do anything special overnight that they don't do during the day, other than slow down processes. Unless you leave the light on....